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ImageJ Analysis: Length Measurement, Area Measurement and Thresholding
ImageJ is an open source image processing program designed for scientific multidimensional images. ImageJ as a web application. In lieu of downloading and installing a desktop application, you can run ImageJ in your web browser (on desktops or mobile devices). Need to pre-process the image to make the cells (second photo �bright spots�) more distinguishable and then also do a cell count.
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Fiji is an open source project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork. Sorry to hear that� Would you have an example ROI file you could share? Source code See the source code page for details on obtaining the ImageJ source code. Hi Egor - an potentially others I would be very interested in working with this pipeline. Zindy Egor Zindy February 23, , am 5.